pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<parent>
		<groupId>org.springframework.boot</groupId>
		<artifactId>spring-boot-starter-parent</artifactId>
		<version>2.3.9.RELEASE</version>
		<relativePath />
		<!-- lookup parent from repository -->
	</parent>
	<groupId>com.drajer.ecrnow</groupId>
	<artifactId>ecr-now</artifactId>
	<version>0.0.1-SNAPSHOT</version>
	<name>eCR Now FHIR App</name>
	<packaging>war</packaging>
	<description>FHIR App to perform electronic case reporting (ecr) by converting to CDA Format</description>

	<properties>
		<java.version>1.8</java.version>
		<fhir.version>5.4.0</fhir.version>
		<fhirpath.version>5.4.0</fhirpath.version>
		<cql-evaluator.version>1.4.5</cql-evaluator.version>
		<logback-contrib.version>0.1.5</logback-contrib.version>
		<skip.integration.tests>false</skip.integration.tests>
		 <logstash-logback-encoder.version>7.4</logstash-logback-encoder.version>
	</properties>

	<distributionManagement>
		<site>
			<id>eCRNOW Report</id>
			<url>${project.build.directory}/staging</url>
		</site>
	</distributionManagement>

	<repositories>
		<repository>
			<id>oss-sonatype</id>
			<url>https://oss.sonatype.org/content/repositories/snapshots</url>
			<snapshots>
				<enabled>true</enabled>
			</snapshots>
		</repository>
		<repository>
			<id>oss-sonatype-public</id>
			<url>https://oss.sonatype.org/content/groups/public/</url>
		</repository>
	</repositories>

	<dependencyManagement>
		<dependencies>
			<dependency>
				<groupId>com.google.guava</groupId>
				<artifactId>guava</artifactId>
				<version>30.1-jre</version>
			</dependency>
		</dependencies>
	</dependencyManagement>
	<dependencies>
		<dependency>
			<groupId>org.springframework.boot</groupId>
			<artifactId>spring-boot-starter-web</artifactId>
		</dependency>

		<dependency>
			<groupId>org.springframework.boot</groupId>
			<artifactId>spring-boot-configuration-processor</artifactId>
			<optional>true</optional>
		</dependency>
		<dependency>
            <groupId>net.logstash.logback</groupId>
            <artifactId>logstash-logback-encoder</artifactId>
            <version>${logstash-logback-encoder.version}</version>
        </dependency>
		<!-- jpa, crud repository -->
		<dependency>
			<groupId>org.springframework.boot</groupId>
			<artifactId>spring-boot-starter-data-jpa</artifactId>
		</dependency>

		<dependency>
			<groupId>org.springframework.boot</groupId>
			<artifactId>spring-boot-starter-actuator</artifactId>
		</dependency>

		<dependency>
			<groupId>org.springframework.boot</groupId>
			<artifactId>spring-boot-starter-data-rest</artifactId>
		</dependency>

		<dependency>
			<groupId>org.springframework.boot</groupId>
			<artifactId>spring-boot-starter-security</artifactId>
		</dependency>

		<!--mssql -->
		<dependency>
			<groupId>com.microsoft.sqlserver</groupId>
			<artifactId>mssql-jdbc</artifactId>
			<version>8.2.2.jre8</version>
		</dependency>

		<!-- PostgreSQL -->
		<dependency>
			<groupId>org.postgresql</groupId>
			<artifactId>postgresql</artifactId>
		</dependency>

		<dependency>
			<groupId>com.github.kagkarlsson</groupId>
			<artifactId>db-scheduler-spring-boot-starter</artifactId>
			<version>11.6</version>
		</dependency>

		<!-- https://mvnrepository.com/artifact/javax.interceptor/javax.interceptor-api -->
		<dependency>
			<groupId>javax.interceptor</groupId>
			<artifactId>javax.interceptor-api</artifactId>
			<version>1.2-b06</version>
		</dependency>


		<dependency>
			<groupId>org.projectlombok</groupId>
			<artifactId>lombok</artifactId>
			<version>1.18.22</version>
			<optional>true</optional>
		</dependency>
		<dependency>
			<groupId>com.jayway.jsonpath</groupId>
			<artifactId>json-path</artifactId>
			<version>2.5.0</version>
		</dependency>
		<dependency>
			<groupId>io.jsonwebtoken</groupId>
			<artifactId>jjwt-api</artifactId>
			<version>0.11.2</version>
		</dependency>
		<dependency>
			<groupId>io.jsonwebtoken</groupId>
			<artifactId>jjwt-impl</artifactId>
			<version>0.11.2</version>
			<scope>runtime</scope>
		</dependency>
		<dependency>
			<groupId>io.jsonwebtoken</groupId>
			<artifactId>jjwt-jackson</artifactId> <!-- or jjwt-gson if Gson is preferred -->
			<version>0.11.2</version>
			<scope>runtime</scope>
		</dependency>
		<!-- FHIR Dependencies -->
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-base</artifactId>
			<version>${fhir.version}</version>
		</dependency>



		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-structures-r4</artifactId>
			<version>${fhir.version}</version>
		</dependency>

		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-structures-dstu2</artifactId>
			<version>${fhir.version}</version>
		</dependency>

		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-validation-resources-r4</artifactId>
			<version>${fhir.version}</version>
		</dependency>

		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-client</artifactId>
			<version>${fhir.version}</version>
		</dependency>

		<dependency>
			<groupId>org.opencds.cqf.cql</groupId>
			<artifactId>evaluator.spring</artifactId>
			<version>${cql-evaluator.version}</version>
			<exclusions>
				<exclusion>
					<groupId>javax</groupId>
					<artifactId>javaee-api</artifactId>
				</exclusion>
			</exclusions>
		</dependency>

		<dependency>
			<groupId>org.opencds.cqf.cql</groupId>
			<artifactId>evaluator.library</artifactId>
			<version>${cql-evaluator.version}</version>
			<exclusions>
				<exclusion>
					<groupId>javax</groupId>
					<artifactId>javaee-api</artifactId>
				</exclusion>
			</exclusions>
		</dependency>

		<dependency>
			<groupId>org.opencds.cqf.cql</groupId>
			<artifactId>evaluator.expression</artifactId>
			<version>${cql-evaluator.version}</version>
			<exclusions>
				<exclusion>
					<groupId>javax</groupId>
					<artifactId>javaee-api</artifactId>
				</exclusion>
			</exclusions>
		</dependency>

		<dependency>
			<groupId>org.opencds.cqf.cql</groupId>
			<artifactId>evaluator.measure-hapi</artifactId>
			<version>${cql-evaluator.version}</version>
			<exclusions>
				<exclusion>
					<groupId>javax</groupId>
					<artifactId>javaee-api</artifactId>
				</exclusion>
			</exclusions>
		</dependency>

		<dependency>
			<groupId>org.json</groupId>
			<artifactId>json</artifactId>
			<version>20190722</version>
		</dependency>

		<!-- Java stuff -->
		<dependency>
			<groupId>com.fasterxml.jackson.core</groupId>
			<artifactId>jackson-core</artifactId>
			<version>2.13.2</version>
		</dependency>
		<dependency>
			<groupId>com.fasterxml.jackson.core</groupId>
			<artifactId>jackson-annotations</artifactId>
			<version>2.13.3</version>
		</dependency>


		<dependency>
			<groupId>com.fasterxml.jackson.core</groupId>
			<artifactId>jackson-databind</artifactId>
			<version>2.12.6.1</version>
		</dependency>


		<dependency>
			<groupId>com.google.code.gson</groupId>
			<artifactId>gson</artifactId>
			<version>2.8.5</version>
		</dependency>

		<dependency>
			<groupId>org.javatuples</groupId>
			<artifactId>javatuples</artifactId>
			<version>1.2</version>
		</dependency>

		<dependency>
			<groupId>org.apache.commons</groupId>
			<artifactId>commons-collections4</artifactId>
			<version>4.4</version>
		</dependency>

		<!-- Schematron Validator -->
		<dependency>
			<groupId>com.helger</groupId>
			<artifactId>ph-schematron-validator</artifactId>
			<version>5.6.0</version>
		</dependency>

		<!-- Direct Dependencies -->
		<dependency>
			<groupId>javax.mail</groupId>
			<artifactId>javax.mail-api</artifactId>
			<version>1.5.2</version>
		</dependency>

		<dependency>
			<groupId>com.sun.mail</groupId>
			<artifactId>javax.mail</artifactId>
			<version>1.5.2</version>
		</dependency>

		<dependency>
			<groupId>com.sun.mail</groupId>
			<artifactId>dsn</artifactId>
			<version>1.4.7</version>
		</dependency>

		<dependency>
			<groupId>org.apache.httpcomponents</groupId>
			<artifactId>httpcore</artifactId>
			<version>4.4.3</version>
		</dependency>

		<dependency>
			<groupId>org.apache.httpcomponents</groupId>
			<artifactId>httpclient</artifactId>
			<version>4.5.13</version>
		</dependency>

		<dependency>
			<groupId>org.apache.httpcomponents</groupId>
			<artifactId>httpmime</artifactId>
			<version>4.5.1</version>
		</dependency>

		<dependency>
			<groupId>commons-io</groupId>
			<artifactId>commons-io</artifactId>
			<version>2.9.0</version>
		</dependency>

		<dependency>
			<groupId>commons-codec</groupId>
			<artifactId>commons-codec</artifactId>
			<version>1.13</version>
		</dependency>

		<dependency>
			<groupId>org.powermock</groupId>
			<artifactId>powermock-api-mockito2</artifactId>
			<version>2.0.7</version>
			<scope>test</scope>
		</dependency>

		<dependency>
			<groupId>org.powermock</groupId>
			<artifactId>powermock-module-junit4</artifactId>
			<version>2.0.7</version>
			<scope>test</scope>
		</dependency>

	

		<!-- Spring Boot Test -->
		<dependency>
			<groupId>org.springframework.boot</groupId>
			<artifactId>spring-boot-starter-test</artifactId>
			<scope>test</scope>
			<exclusions>
				<exclusion>
					<groupId>org.junit.vintage</groupId>
					<artifactId>junit-vintage-engine</artifactId>
				</exclusion>
			</exclusions>
		</dependency>

		<dependency>
			<groupId>com.h2database</groupId>
			<artifactId>h2</artifactId>
			<scope>test</scope>
		</dependency>

		<dependency>
			<groupId>com.github.tomakehurst</groupId>
			<artifactId>wiremock-jre8</artifactId>
			<version>2.31.0</version>
			<scope>test</scope>
		</dependency>

		<dependency>
			<groupId>com.fasterxml.jackson.dataformat</groupId>
			<artifactId>jackson-dataformat-yaml</artifactId>
			<version>2.11.1</version>
		</dependency>

		<!-- Dependency for formatting logs in json format -->
		<dependency>
			<groupId>ch.qos.logback.contrib</groupId>
			<artifactId>logback-json-classic</artifactId>
			<version>${logback-contrib.version}</version>
		</dependency>

		<dependency>
			<groupId>ch.qos.logback.contrib</groupId>
			<artifactId>logback-jackson</artifactId>
			<version>${logback-contrib.version}</version>
		</dependency>
		<dependency>
			<groupId>org.springframework.retry</groupId>
			<artifactId>spring-retry</artifactId>
		</dependency>
	</dependencies>

	<build>
		<finalName>${project.artifactId}</finalName>
		<plugins>
			<plugin>
				<groupId>org.springframework.boot</groupId>
				<artifactId>spring-boot-maven-plugin</artifactId>
			</plugin>

			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-source-plugin</artifactId>
				<executions>
					<execution>
						<id>attach-sources</id>
						<goals>
							<goal>jar</goal>
						</goals>
					</execution>
				</executions>
			</plugin>

			<plugin>
				<groupId>org.jacoco</groupId>
				<artifactId>jacoco-maven-plugin</artifactId>
				<version>0.8.6</version>
				<executions>
					<!-- For Unit Test Coverage - jacoco-ut.exec -->
					<execution>
						<id>pre-unit-test</id>
						<goals>
							<goal>prepare-agent</goal>
						</goals>
						<configuration>
							<destFile>${project.build.directory}/jacoco-ut.exec</destFile>
							<propertyName>surefireArgLine</propertyName>
						</configuration>
					</execution>
					<execution>
						<id>post-unit-test</id>
						<phase>test</phase>
						<goals>
							<goal>report</goal>
						</goals>
						<configuration>
							<dataFile>${project.build.directory}/jacoco-ut.exec</dataFile>
							<outputDirectory>${project.reporting.outputDirectory}/jacoco-ut</outputDirectory>
						</configuration>
					</execution>
					<!-- For Integration Test Coverage - jacoco-it.exec -->
					<execution>
						<id>pre-integration-test</id>
						<phase>pre-integration-test</phase>
						<goals>
							<goal>prepare-agent</goal>
						</goals>
						<configuration>
							<destFile>${project.build.directory}/jacoco-it.exec</destFile>
							<propertyName>failsafeArgLine</propertyName>
						</configuration>
					</execution>
					<execution>
						<id>post-integration-test</id>
						<phase>post-integration-test</phase>
						<goals>
							<goal>report</goal>
						</goals>
						<configuration>
							<dataFile>${project.build.directory}/jacoco-it.exec</dataFile>
							<outputDirectory>${project.reporting.outputDirectory}/jacoco-it</outputDirectory>
						</configuration>
					</execution>
					<!-- Merge both Unit and Integration Test Coverage to one report - jacoco.exec -->
					<execution>
						<id>jacoco-merge-report-verify</id>
						<phase>verify</phase>
						<goals>
							<goal>merge</goal>
							<goal>report</goal>
						</goals>
						<configuration>
							<fileSets>
								<fileSet>
									<directory>${project.build.directory}</directory>
									<includes>
										<include>*.exec</include>
									</includes>
								</fileSet>
							</fileSets>
							<destFile>${project.build.directory}/jacoco.exec</destFile>
							<dataFile>${project.build.directory}/jacoco.exec</dataFile>
							<outputDirectory>${project.reporting.outputDirectory}/report</outputDirectory>
							<skip>${skip-jacoco-check}</skip>
						</configuration>
					</execution>
				</executions>
			</plugin>
			<!-- Used for unit tests -->
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-surefire-plugin</artifactId>
				<version>2.21.0</version>
				<executions>
					<execution>
						<id>default-test</id>
						<goals>
							<goal>test</goal>
						</goals>
						<configuration>
							<argLine>${surefireArgLine}</argLine>
							<skipTests>${skip.unit.tests}</skipTests>
							<excludes>
								<exclude>**/IT*.java</exclude>
							</excludes>
						</configuration>
					</execution>
				</executions>
			</plugin>
			<!-- Used for integration tests -->
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-failsafe-plugin</artifactId>
				<version>2.21.0</version>
				<executions>
					<execution>
						<goals>
							<goal>integration-test</goal>
							<goal>verify</goal>
						</goals>
						<configuration>
							<includes>
								<include>**/IT*.java</include>
							</includes>
							<argLine>${failsafeArgLine}</argLine>
							<skipTests>${skip.integration.tests}</skipTests>
						</configuration>
					</execution>
				</executions>
			</plugin>

			<plugin>
				<groupId>com.coveo</groupId>
				<artifactId>fmt-maven-plugin</artifactId>
				<version>2.5.1</version>
				<executions>
					<execution>
						<id>fmt-check</id>
						<goals>
							<goal>check</goal>
						</goals>
						<phase>validate</phase>
					</execution>
				</executions>
			</plugin>
		</plugins>
	</build>

	<reporting>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-project-info-reports-plugin</artifactId>
				<version>2.4</version>
				<configuration>
					<dependencyDetailsEnabled>false</dependencyDetailsEnabled>
					<dependencyLocationsEnabled>false</dependencyLocationsEnabled>
					<reportsDirectories>
						<reportsDirectory>${basedir}/target/failsafe-reports</reportsDirectory>
					</reportsDirectories>
				</configuration>
				<reportSets>
					<reportSet>
						<reports>
							<report>index</report>
							<report>summary</report>
							<report>dependencies</report>
							<report>plugin-management</report>
						</reports>
					</reportSet>
				</reportSets>
			</plugin>

			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-jxr-plugin</artifactId>
				<version>2.3</version>
				<reportSets>
					<reportSet>
						<id>aggregate</id>
						<inherited>false</inherited>
						<reports>
							<report>aggregate</report>
						</reports>
					</reportSet>
				</reportSets>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-surefire-report-plugin</artifactId>
				<version>3.0.0-M5</version>
			</plugin>
		</plugins>
	</reporting>

	<profiles>
		<profile>
			<id>eCRNow</id>
			<activation>
				<file>
					<exists>${basedir}</exists>
				</file>
			</activation>
			<build>
				<plugins>
					<plugin>
						<groupId>org.apache.maven.plugins</groupId>
						<artifactId>maven-site-plugin</artifactId>
						<version>4.0.0-M1</version>
						<executions>
							<execution>
								<id>attach-descriptor</id>
								<goals>
									<goal>stage</goal>
								</goals>
							</execution>
						</executions>
					</plugin>
					<plugin>
						<groupId>org.apache.maven.plugins</groupId>
						<artifactId>maven-scm-publish-plugin</artifactId>
						<version>3.1.0</version>
						<configuration>
							<scmBranch>master</scmBranch>
							<skipDeletedFiles>true</skipDeletedFiles>
						</configuration>
					</plugin>
				</plugins>
			</build>
		</profile>
		<profile>
			<id>kubernetes-dependency</id>
			<dependencies>
				<dependency>
					<groupId>org.springframework.cloud</groupId>
					<artifactId>spring-cloud-starter-kubernetes-config</artifactId>
					<version>1.0.0.RELEASE</version>
					<scope>runtime</scope>
				</dependency>
				<dependency>
					<groupId>io.fabric8</groupId>
					<artifactId>kubernetes-client</artifactId>
					<version>4.0.4</version>
					<scope>runtime</scope>
				</dependency>
			</dependencies>
		</profile>
	</profiles>

</project>