{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"BioinformaticsIntroduction","owner":"WilsonSayresLab","isFork":false,"description":"","allTopics":["bioinformatics","python","unix","tutorial","cluster","lab","sftp","slurm","batch-script","trainee"],"primaryLanguage":null,"pullRequestCount":1,"issueCount":0,"starsCount":27,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-05-20T18:52:44.976Z"}},{"type":"Public","name":"XYalign","owner":"WilsonSayresLab","isFork":false,"description":"Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":5,"starsCount":23,"forksCount":5,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-04-11T03:23:24.809Z"}},{"type":"Public","name":"PopInf","owner":"WilsonSayresLab","isFork":false,"description":"Method to infer the major population (or populations) ancestry of a sample or set of samples.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-03-01T18:50:45.605Z"}},{"type":"Public","name":"Neoepitope_Prediction","owner":"WilsonSayresLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-02-21T21:54:36.285Z"}},{"type":"Public","name":"XY_RNAseq","owner":"WilsonSayresLab","isFork":false,"description":"Alignment and filtering effects on RNAseq analysis on the X and Y chromosomes","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":1,"issueCount":0,"starsCount":3,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-12-11T20:56:20.507Z"}},{"type":"Public","name":"eQTL","owner":"WilsonSayresLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-09-21T21:10:45.085Z"}},{"type":"Public","name":"AlignmentProcessor","owner":"WilsonSayresLab","isFork":false,"description":"Prepares CDS fasta Alignments for use with several programs","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":6,"forksCount":3,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-08-03T21:51:17.642Z"}},{"type":"Public","name":"SexDiffExpression","owner":"WilsonSayresLab","isFork":false,"description":"RNAseq analysis code, specifically focusing on sex differences in expression","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-06-27T22:19:51.811Z"}},{"type":"Public","name":"TurkanaSelection","owner":"WilsonSayresLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-06-27T21:08:51.549Z"}},{"type":"Public","name":"PcTF_differential_expression","owner":"WilsonSayresLab","isFork":false,"description":"Code for analyzing RNAseq data from cell lines expressing PcTF, and code for making figures","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-03-24T16:08:27.658Z"}},{"type":"Public","name":"Teaching_GeneticDrift","owner":"WilsonSayresLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-01-23T17:43:55.197Z"}},{"type":"Public","name":"Nasonia","owner":"WilsonSayresLab","isFork":false,"description":"Wasp parent of origin effects","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-09-20T18:02:54.753Z"}},{"type":"Public","name":"Coverage_BSP","owner":"WilsonSayresLab","isFork":false,"description":"How does reduced coverage affect demographic inference in Bayesian Skyline Plots","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-08-24T18:19:22.698Z"}},{"type":"Public","name":"ASEofBases","owner":"WilsonSayresLab","isFork":false,"description":"Allele Specific Expression method and pipeline for analysis","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-05-30T22:04:42.698Z"}},{"type":"Public","name":"myeloma","owner":"WilsonSayresLab","isFork":false,"description":"This repository contains the code used in the myeloma/selection project.","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-04-18T22:12:12.096Z"}},{"type":"Public","name":"Placenta1","owner":"WilsonSayresLab","isFork":false,"description":"Reanalysis of preexisting placenta RNAseq data","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-10-26T21:08:15.041Z"}},{"type":"Public","name":"Y_diversity","owner":"WilsonSayresLab","isFork":false,"description":"Scripts for modeling and empirically calculating diversity on Y and mtDNA. Potentially to expand at a later date. ","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-10-26T17:40:58.524Z"}},{"type":"Public","name":"Useful_code","owner":"WilsonSayresLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":0,"starsCount":7,"forksCount":7,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-10-17T18:34:50.702Z"}},{"type":"Public","name":"MMB_flies","owner":"WilsonSayresLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-09-15T23:01:26.986Z"}},{"type":"Public","name":"TumorHeterogeneity","owner":"WilsonSayresLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Scala","color":"#c22d40"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-09-06T23:23:47.008Z"}},{"type":"Public","name":"MMB_apes","owner":"WilsonSayresLab","isFork":false,"description":"Codes related to studying male mutation bias across apes","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-07-29T21:49:27.794Z"}},{"type":"Public","name":"Anole_expression","owner":"WilsonSayresLab","isFork":false,"description":"Understanding variation in squamate sex determination and sex chromosome evolution","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-07-26T18:14:11.712Z"}},{"type":"Public","name":"PARdiversity","owner":"WilsonSayresLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-03-23T17:17:23.897Z"}},{"type":"Public","name":"Diversity_simulations","owner":"WilsonSayresLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-10-24T00:45:33.801Z"}}],"repositoryCount":24,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"WilsonSayresLab repositories"}