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Train_SleepStaging_RF.m
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Train_SleepStaging_RF.m
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function [ss_rf,ss_rf_importance] = Train_SleepStaging_RF(n_trees,Sleep_table,SS_Features,hyp)
% Copyright (c) 2018, Navin Cooray (University of Oxford)
% All rights reserved.
%
% Redistribution and use in source and binary forms, with or without
% modification, are permitted provided that the following conditions are
% met:
%
% 1. Redistributions of source code must retain the above copyright
% notice, this list of conditions and the following disclaimer.
%
% 2. Redistributions in binary form must reproduce the above copyright
% notice, this list of conditions and the following disclaimer in the
% documentation and/or other materials provided with the distribution.
%
% 3. Neither the name of the University of Oxford nor the names of its
% contributors may be used to endorse or promote products derived
% from this software without specific prior written permission.
%
% THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
% "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
% LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
% A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
% HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
% SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
% LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
% DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
% THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
% (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
% OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
% Contact: navsnav@gmail.com
% Originally written by Navin Cooray 19-Sept-2018
% Input: (n_trees,Sleep,SS_Features,hyp)
% n_trees: Number of trees to train random forest.
% Sleep: Features/Data used to train rf model.
% SS_Features: Specific features within Sleep used to train rf model.
% hyp: Annotated sleep staging to train rf model.
% Output:
% ss_rf: Trained random forest model.
% ss_rf_importance: Feature importance values for each feature.
ss_rf = TreeBagger(n_trees,Sleep_table(:,SS_Features),hyp,'OOBPredictorImportance','on');
ss_rf_importance = [ss_rf.OOBPermutedPredictorDeltaError',ss_rf.DeltaCriterionDecisionSplit'];
end