_pkgdown.yml

destination: docs
url: https://masurp.github.io/specr/index.html

template:
  params:
  bootswatch: lumen

reference:
  - title: "Conduct specification curve analysis"
    desc: >
      Core functions of the package that allow to a) setup all specifications and b) then fit models across all specifications
    contents:
      - setup
      - specr
      - boot_null
  - title: "Summarize results"
    desc: >
      All functions above create S3 classes that can be investigated with the generic summary function and transformed to data frames.
    contents:
      - summary.specr.setup
      - summary.specr.object
      - summary.specr.boot
  - title: "Visualizations"
    desc: >
      After running setup() or specr(), the resulting S3 class objects can be passed to the generic plot function to create visualizations.
    contents:
      - plot.specr.setup
      - plot.specr.object
      - plot.specr.boot
  - title: "Data set(s)"
    contents:
      - example_data
  - title: "Deprecated"
    desc: >
      The following function still exist and can be used, but are deprecated from version 1.0.0 on.
    contents:
      - setup_specs
      - run_specs
      - plot_specs
      - plot_curve
      - plot_choices
      - plot_summary
      - plot_samplesizes
      - plot_variance
      - plot_decisiontree
      - summarise_specs
      - icc_specs

navbar:
  structure:
    left:  [intro, reference, articles, news]
    right: [search, github]
  type: default
  left:
  - text: Getting started
    href: articles/getting-started.html
  - text: Reference
    href: reference/index.html
  - text: Articles
    menu:
    - text: Basics
    - text: Setting up different types of specifications
      href: articles/different-specifications.html
    - text: Visualizing specification curve analyses
      href: articles/custom-plot.html
    - text: Investigating specific specifications
      href: articles/invest-spec.html
    - text: Inferences with specification curve analysis
      href: articles/inferences.html
    - text: Parallelization
      href: articles/parallelization.html
    - text: -------
    - text: Incorporating specific models
    - text: Structural equation models
      href: articles/measurement-models.html
    - text: Multilevel models
      href: articles/multilevel-models.html
    - text: Bayesian models
      href: articles/parallel-bayesian-models.html
  - text: News
    href: news/index.html
  right:
  - icon: fa-github fa-lg
    href: https://github.com/masurp/specr