diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index 91daa35..371b5bc 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -31,7 +31,7 @@ jobs: if [[ -z "$changed_files_tags" ]]; then echo "matrix=[]" >> $GITHUB_OUTPUT else - matrix_json=$(echo "$changed_files_tags" | jq -c -M -R 'split(" ") | map({tag: .})') + matrix_json=$(echo "$changed_files_tags" | jq -c -M -R 'split(" ") | map(.)') echo $matrix_json echo "matrix=$matrix_json" >> $GITHUB_OUTPUT fi @@ -42,7 +42,8 @@ jobs: needs: changed strategy: fail-fast: false - matrix: ${{fromJson(needs.changed.outputs.matrix)}} + matrix: + tag: ${{fromJson(needs.changed.outputs.matrix)}} services: docker: image: docker:19.03.12 diff --git a/tasks/quast/quast.wdl b/tasks/quast/quast.wdl index 74c758b..a93c6f1 100644 --- a/tasks/quast/quast.wdl +++ b/tasks/quast/quast.wdl @@ -3,10 +3,10 @@ version 1.0 task Quast { input { Array[File] contigs - Int threads = 4 + File? reference String output_dir = "./quast_output" + Int threads = 4 String extra_args = "" - File? reference String container = "quay.io/biocontainers/quast:5.2.0--py39pl5321h4e691d4_3" Boolean stub = false }