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Jan Hansen edited this page Mar 4, 2023 · 29 revisions

CiliaQ Wiki

Welcome to the CiliaQ wiki! You are encountering problem with your own CiliaQ analysis or want to learn more about how to apply CiliaQ? See our Q&A section or follow one of our tutorials.

Please note that the CiliaQ wiki is a lively platform and more content and functions of the wiki will be realized.

Tutorials

We provide video tutorials on our CiliaQ YouTube Channel and written tutorials here in the Wiki. More tutorials will be developed soon - stay tuned!

The CiliaQ workflow in steps

  1. Installing the software and getting an overview about the CiliaQ workflow
    • To install CiliaQ follow this guide
    • Watch this video tutorial on YouTube
      • Note: Since we generated the video, a new / better way to install the ImageJ 3D Suite has been become available. Please follow the guide for installing CiliaQ. The video tutorial, however, also introduces CiliaQ and thus, may still be helpful.
  2. CiliaQ Preparator - automatically segmenting cilia from background
  3. CiliaQ Editor - editing segmentations
  4. CiliaQ - detecting and quantifying cilia from the segmented image and visualizing results
  5. Understand the parameters and interpret the results
    • Here we provide a written tutorial on the output parameters that you generate with CiliaQ, how to retrieve them from the output file, how they are calculated, and how they can be interpreted.

Learning CiliaQ analysis - run an example data set

Try analyzing images with CiliaQ with our example data sets, providing images with instructions on how to analyze them.

Q&A: Question And Answer

We provide Questions & Answers for commonly asked questions to help you perform and optimize your CiliaQ analysis. If you want to submit additional questions of common interest, please let us know (e.g. by e-mail to: jan.hansen (at) uni-bonn.de).

Q&As for installations and troubleshooting errors

Q&As for CiliaQ