From 87db5d231eb8a67c01881a6793a02aea7e7d08c6 Mon Sep 17 00:00:00 2001 From: jvfe Date: Thu, 27 Jun 2024 09:31:51 -0300 Subject: [PATCH 1/2] refact: Add performance parameters to iqtree --- conf/modules.config | 1 + 1 file changed, 1 insertion(+) diff --git a/conf/modules.config b/conf/modules.config index 4b68380..cf529bc 100755 --- a/conf/modules.config +++ b/conf/modules.config @@ -389,6 +389,7 @@ process { // phylogenomics withName: IQTREE { + ext.args = '-m HKY+F+G+ASC -fast' publishDir = [ path: { "${params.outdir}/phylogenomics/iqtree" }, mode: params.publish_dir_mode, From 6c2aa5a77e17e53ee97c714881559ffd86e895d9 Mon Sep 17 00:00:00 2001 From: jvfe Date: Thu, 27 Jun 2024 14:23:52 -0300 Subject: [PATCH 2/2] fix: Remove +ASC --- conf/modules.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/conf/modules.config b/conf/modules.config index cf529bc..870b5ae 100755 --- a/conf/modules.config +++ b/conf/modules.config @@ -389,7 +389,7 @@ process { // phylogenomics withName: IQTREE { - ext.args = '-m HKY+F+G+ASC -fast' + ext.args = '-fast -m HKY+F+G' publishDir = [ path: { "${params.outdir}/phylogenomics/iqtree" }, mode: params.publish_dir_mode,