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bitbucket-pipelines.yml
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bitbucket-pipelines.yml
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image: python:3.11-slim
definitions:
caches:
testfiles: tests_basic/test_files
steps:
- step: &pre-commit-checks
name: Pre-commit checks
image: python:3.11-slim
script:
- apt-get update
- apt-get -y install git
- pip install pre-commit
- pre-commit run --all-files
- step: &set-up-env
name: Set up Env
caches:
- pip
script:
- apt-get update
- python -m venv venv
- source venv/bin/activate
- pip install .[dev]
- pip install .[docs]
- pip uninstall pylinac -y
- pip freeze
artifacts:
- venv/**
- step: &push-to-github
name: Push to Github
clone:
depth: full
script:
- apt update
- apt install git -y
- git push git@github.com:jrkerns/pylinac.git $BITBUCKET_BRANCH
- step: &build-docs
name: Build Docs
script:
- source venv/bin/activate
- nox -s build_docs
condition:
changesets:
includePaths:
- "**/*.rst"
- "*.rst"
- step: &cbct-tests
name: Run CBCT Tests
size: 2x
script:
- source venv/bin/activate
- pytest tests_basic/test_cbct.py -n 2 --cov=pylinac.cbct --cov-report term --junitxml=./test-reports/pytest_results.xml
caches:
- testfiles
condition:
changesets:
includePaths:
- "pylinac/core/**"
- "tests_basic/test_cbct.py"
- "pylinac/ct.py"
- step: &quart-tests
name: Run Quart Tests
script:
- source venv/bin/activate
- pytest tests_basic/test_quart.py --cov=pylinac.quart --cov-report term --junitxml=./test-reports/pytest_results.xml
caches:
- testfiles
condition:
changesets:
includePaths:
- "pylinac/core/**"
- "tests_basic/test_quart.py"
- "pylinac/quart.py"
- "pylinac/ct.py"
- step: &acr-tests
name: Run ACR CT/MRI Tests
script:
- source venv/bin/activate
- pytest tests_basic/test_acr.py --cov=pylinac.acr --cov-report term --junitxml=./test-reports/pytest_results.xml
caches:
- testfiles
condition:
changesets:
includePaths:
- "pylinac/core/**"
- "tests_basic/test_acr.py"
- "pylinac/ct.py"
- "pylinac/acr.py"
- step: &cheese-tests
name: Run Cheese Phantom Tests
script:
- source venv/bin/activate
- pytest tests_basic/test_cheese.py --cov=pylinac.cheese --cov-report term --junitxml=./test-reports/pytest_results.xml
caches:
- testfiles
condition:
changesets:
includePaths:
- "pylinac/core/**"
- "tests_basic/test_cheese.py"
- "pylinac/ct.py"
- "pylinac/cheese.py"
- step: &planar-tests
name: Run Planar Imaging Tests
script:
- source venv/bin/activate
- pytest tests_basic/test_planar_imaging.py --cov-report term --junitxml=./test-reports/pytest_results.xml
caches:
- testfiles
condition:
changesets:
includePaths:
- "pylinac/core/**"
- "tests_basic/test_planar_imaging.py"
- "pylinac/planar_imaging.py"
- step: &dlg-tests
name: Run DLG Tests
script:
- source venv/bin/activate
- pytest tests_basic/test_dlg.py --cov-report term --junitxml=./test-reports/pytest_results.xml
caches:
- testfiles
condition:
changesets:
includePaths:
- "pylinac/core/**"
- "tests_basic/test_dlg.py"
- "pylinac/dlg.py"
- step: &field-analysis-tests
name: Run Field Analysis Tests
script:
- source venv/bin/activate
- pytest tests_basic/test_field_analysis.py --cov-report term --junitxml=./test-reports/pytest_results.xml
caches:
- testfiles
condition:
changesets:
includePaths:
- "pylinac/core/**"
- "tests_basic/test_field_analysis.py"
- "pylinac/field_analysis.py"
- step: &machine-log-tests
name: Run Machine Logs Tests
script:
- source venv/bin/activate
- pytest tests_basic/test_logs.py --cov-report term --junitxml=./test-reports/pytest_results.xml
caches:
- testfiles
condition:
changesets:
includePaths:
- "pylinac/core/**"
- "tests_basic/test_lost.py"
- "pylinac/log_analyzer.py"
- step: &picket-fence-tests
name: Run Picket Fence Tests
script:
- source venv/bin/activate
- pytest tests_basic/test_picketfence.py --cov-report term --junitxml=./test-reports/pytest_results.xml
caches:
- testfiles
condition:
changesets:
includePaths:
- "pylinac/core/**"
- "tests_basic/test_picketfence.py"
- "pylinac/picketfence.py"
- step: &starshot-tests
name: Run Starshot Tests
script:
- source venv/bin/activate
- pytest tests_basic/test_starshot.py --cov-report term --junitxml=./test-reports/pytest_results.xml
caches:
- testfiles
condition:
changesets:
includePaths:
- "pylinac/core/**"
- "tests_basic/test_starshot.py"
- "pylinac/starshot.py"
- step: &calibration-tests
name: Run TG-51/TRS-398 Tests
script:
- source venv/bin/activate
- pytest tests_basic/test_tg51.py tests_basic/test_trs398.py --cov-report term --junitxml=./test-reports/pytest_results.xml
caches:
- testfiles
condition:
changesets:
includePaths:
- "pylinac/core/**"
- "tests_basic/test_tg51.py"
- "tests_basic/test_trs398.py"
- "pylinac/vmat.py"
- step: &vmat-tests
name: Run VMAT Tests
script:
- source venv/bin/activate
- pytest tests_basic/test_vmat.py --cov-report term --junitxml=./test-reports/pytest_results.xml
caches:
- testfiles
condition:
changesets:
includePaths:
- "pylinac/core/**"
- "tests_basic/test_vmat.py"
- "pylinac/vmat.py"
- step: &winston-lutz-tests
name: Run Winston-Lutz Tests
size: 2x
script:
- source venv/bin/activate
- pytest tests_basic/test_winstonlutz.py --cov-report term --junitxml=./test-reports/pytest_results.xml
condition:
changesets:
includePaths:
- "pylinac/core/**"
- "tests_basic/test_winstonlutz.py"
- "pylinac/winston_lutz.py"
- step: &winston-lutz-mtmf-tests
name: Run Winston-Lutz Multi-Target Multi-Field Tests
size: 2x
script:
- source venv/bin/activate
- pytest tests_basic/test_winstonlutz_mtmf.py --cov-report term --junitxml=./test-reports/pytest_results.xml
condition:
changesets:
includePaths:
- "pylinac/core/**"
- "tests_basic/test_winstonlutz.py"
- "pylinac/winston_lutz.py"
- step: &plan-generator-tests
name: Plan generator tests
script:
- source venv/bin/activate
- pytest tests_basic/test_plan_generator.py --cov-report term --junitxml=./test-reports/pytest_results.xml
condition:
changesets:
includePaths:
- "pylinac/core/**"
- "pylinac/plan_generator/**"
- "tests_basic/test_plan_generator.py"
- step: &core-module-tests
name: Run core module tests
script:
- source venv/bin/activate
- pytest tests_basic/core --cov-report term --junitxml=./test-reports/pytest_results.xml
caches:
- testfiles
condition:
changesets:
includePaths:
- "pylinac/core/**"
- "tests_basic/core/**"
- step: &update-dev-kraken
name: Update Dev Kraken
script:
- apt-get update
- apt-get install wget -y
- pip install nox
# Get gcloud CLI
- wget https://dl.google.com/dl/cloudsdk/channels/rapid/downloads/google-cloud-cli-416.0.0-linux-x86_64.tar.gz -O gcloud_cli.tar.gz
- tar -xf gcloud_cli.tar.gz
- ./google-cloud-sdk/install.sh --quiet
- export PATH="./google-cloud-sdk/bin:$PATH"
- nox -s update_dev_kraken
pipelines:
custom:
update-kraken:
- step: *set-up-env
- step: *update-dev-kraken
pypi:
- step:
name: Set up Env
caches:
- pip
script:
- apt-get update
- python -m venv venv
- source venv/bin/activate
- pip install .[dev]
artifacts:
- venv/**
- step:
name: Push to PYPI
script:
- source venv/bin/activate
- pipe: atlassian/pypi-publish:0.3.1
variables:
PYPI_USERNAME: $PYPI_USERNAME
PYPI_PASSWORD: $PYPI_PASSWORD
DISTRIBUTIONS: 'bdist_wheel'
pull-requests:
'**':
- parallel:
- step: *set-up-env
- step: *pre-commit-checks
- parallel:
- step: *build-docs
- step: *cbct-tests
- step: *acr-tests
- step: *cheese-tests
- step: *quart-tests
- step: *planar-tests
- step: *dlg-tests
- step: *field-analysis-tests
- step: *machine-log-tests
- step: *picket-fence-tests
- step: *starshot-tests
- step: *calibration-tests
- step: *vmat-tests
- step: *winston-lutz-tests
- step: *winston-lutz-mtmf-tests
- step: *plan-generator-tests
- step: *core-module-tests
branches:
release*:
- step: *push-to-github
master:
- step: *push-to-github
- step: *update-dev-kraken