Scripts for mapping and quality control of DEST dataset
populationInfo\
: Has supplemental data from the DrosEU, DrosRTEC, and DPGP files to make a unified meta-datafile; attaches GHCND station based on lat. and long.
mappingPipeline\
: Contains dockerized mapping pipeline. Downloads data, produces bam files, filter files, gSYNC files
add_DGN_datda\
: Downloads, formats, lifts-over DGN data into gSYNC format
PoolSNP4Sync\
: SNP calling based on gSYNC files
SNAPE\
: SNP calling based on snape output
utility\
: (a) download individual files; (b)