From 5cb1f7f3da10451f340143bf395dcc3b2d8c50e6 Mon Sep 17 00:00:00 2001
From: KevinKuchinski <66155251+KevinKuchinski@users.noreply.github.com>
Date: Tue, 15 Mar 2022 23:12:46 -0700
Subject: [PATCH] Update README.md

---
 README.md | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 7c480d5..cdd7def 100644
--- a/README.md
+++ b/README.md
@@ -87,4 +87,5 @@ The report TSV file contains the following columns:
 <b>seq_length</b> : the length (in nucleotides) of the consensus sequence generated by FluViewer
 
 <b>sequenced_bases</b> : the number of nucleotide positions in the consensus sequence with sufficient depth of coverage (set by -D argument) and a succesful base call (e.g. A, T, G, or C)
-<b>segment_cov</b> : the length of the consensus sequence divided by the typical length of this genome segment (as a percentage).
+
+<b>segment_cov</b> : the number of sequenced bases in the consensus sequence divided by the typical length of this genome segment (as a percentage). The typical segment length is determined by finding the median length of the segment/subject reference sequences whose contig alignments have the highest bitscore.