From 2db1a17c98e04c410c7c88dda708f50e41045233 Mon Sep 17 00:00:00 2001 From: Jessica Rowell Date: Wed, 21 Feb 2024 14:48:46 -0500 Subject: [PATCH 1/2] update staphb container yml file for new seqsender code --- environment.yml | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index fd640df7..1c602361 100644 --- a/environment.yml +++ b/environment.yml @@ -8,6 +8,8 @@ dependencies: - libgcc-ng=12.1.0=h8d9b700_16 - libstdcxx-ng=12.1.0=ha89aaad_16 - liftoff=1.6.3=pyhdfd78af_0 + - lxml=4.9.1=py38h1edc446_0 + - nameparser=1.0.5=py_0 - numpy=1.22.4=py39hc58783e_0 - packaging=21.3=pyhd3eb1b0_0 - pandas=1.4.2=py39h1832856_2 @@ -32,4 +34,5 @@ dependencies: - xz=5.2.5=h516909a_1 - yaml=0.2.5=h7f98852_2 - openpyxl=3.0.10 - - repeatmasker \ No newline at end of file + - repeatmasker + - xmltodict=0.13.0=pyhd8ed1ab_0 From 9fa3cf8a2e4ee2006b2726572e2ec7e53a545bc7 Mon Sep 17 00:00:00 2001 From: Jessica Rowell Date: Thu, 22 Feb 2024 01:20:05 -0500 Subject: [PATCH 2/2] change tag on lxml to a version compatible with other required libraries --- environment.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index 1c602361..cb84e9da 100644 --- a/environment.yml +++ b/environment.yml @@ -8,7 +8,7 @@ dependencies: - libgcc-ng=12.1.0=h8d9b700_16 - libstdcxx-ng=12.1.0=ha89aaad_16 - liftoff=1.6.3=pyhdfd78af_0 - - lxml=4.9.1=py38h1edc446_0 + - lxml=4.9.1=py39hb9d737c_0 - nameparser=1.0.5=py_0 - numpy=1.22.4=py39hc58783e_0 - packaging=21.3=pyhd3eb1b0_0