{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":441121136,"defaultBranch":"main","name":"AMPSphereBackend","ownerLogin":"BigDataBiology","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-12-23T08:58:35.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/38910137?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1698915208.0","currentOid":""},"activityList":{"items":[{"before":"200d7d318820240f892a7d0f30174f2bfe4d41a0","after":"8f2c1334c899e780dc56a8bb2228b830482e40f9","ref":"refs/heads/main","pushedAt":"2024-06-28T07:43:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"BLD Ignore pytest cache & adjust ignores","shortMessageHtmlLink":"BLD Ignore pytest cache & adjust ignores"}},{"before":"c56d5009add495c57b321ae79a992686585b0b3a","after":"200d7d318820240f892a7d0f30174f2bfe4d41a0","ref":"refs/heads/main","pushedAt":"2024-06-28T07:37:30.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"DOC Add README file for database download","shortMessageHtmlLink":"DOC Add README file for database download"}},{"before":"60dd01d69dc15e97ec3fe84e74ce3a2740c6f242","after":"c56d5009add495c57b321ae79a992686585b0b3a","ref":"refs/heads/main","pushedAt":"2024-06-27T01:54:09.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"ENH Save the coprediction table as a numpy array for speed","shortMessageHtmlLink":"ENH Save the coprediction table as a numpy array for speed"}},{"before":"9def72b937ee380a21954f4958e2f71c9845ef1d","after":"60dd01d69dc15e97ec3fe84e74ce3a2740c6f242","ref":"refs/heads/main","pushedAt":"2024-05-26T10:18:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"DOC Update README","shortMessageHtmlLink":"DOC Update README"}},{"before":"1b2b27dca9641d1197b7c7b3d28829bf72fc902d","after":"9def72b937ee380a21954f4958e2f71c9845ef1d","ref":"refs/heads/main","pushedAt":"2024-05-26T10:17:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"DOC Update contact/URL","shortMessageHtmlLink":"DOC Update contact/URL"}},{"before":"25d27401a6323dfeb523b9110d5058cded6369cc","after":"1b2b27dca9641d1197b7c7b3d28829bf72fc902d","ref":"refs/heads/main","pushedAt":"2024-05-26T05:33:59.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"ENH Add sequence-match endpoint","shortMessageHtmlLink":"ENH Add sequence-match endpoint"}},{"before":"b10f223c7437814efdec413d379dd509db30ea7b","after":"25d27401a6323dfeb523b9110d5058cded6369cc","ref":"refs/heads/main","pushedAt":"2024-05-14T12:54:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"RFCT Remove outdated code","shortMessageHtmlLink":"RFCT Remove outdated code"}},{"before":"396868d4f79a4339d999f5676ad8e2fdbabd0c98","after":"b10f223c7437814efdec413d379dd509db30ea7b","ref":"refs/heads/main","pushedAt":"2024-05-13T10:52:18.000Z","pushType":"push","commitsCount":16,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"ENH Remove SQL completely","shortMessageHtmlLink":"ENH Remove SQL completely"}},{"before":"2569011786298297d70ba5d4f015326d04376d37","after":"396868d4f79a4339d999f5676ad8e2fdbabd0c98","ref":"refs/heads/main","pushedAt":"2024-05-11T02:33:39.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"RFCT Simpler get_number_genes code\n\nPrecompute everything when loading using pandas instead of sqlite","shortMessageHtmlLink":"RFCT Simpler get_number_genes code"}},{"before":"0641b90e382c510224c23646d1481543d59f95c5","after":"2569011786298297d70ba5d4f015326d04376d37","ref":"refs/heads/main","pushedAt":"2024-05-11T02:07:03.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"RFCT Simpler get_number_genes code\n\nPrecompute everything when loading using pandas instead of sqlite","shortMessageHtmlLink":"RFCT Simpler get_number_genes code"}},{"before":"de234c9490c7f1e71926172b71b0e5373d9b974c","after":"0641b90e382c510224c23646d1481543d59f95c5","ref":"refs/heads/main","pushedAt":"2024-01-04T12:11:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"MIN Import utils","shortMessageHtmlLink":"MIN Import utils"}},{"before":"3f69b309f778230d19f9e5f3922b642487f5ab1f","after":"de234c9490c7f1e71926172b71b0e5373d9b974c","ref":"refs/heads/main","pushedAt":"2023-12-26T12:55:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"DOC Update README","shortMessageHtmlLink":"DOC Update README"}},{"before":"afbd865555c21d8d4db32a933676801b9d39e6d2","after":"3f69b309f778230d19f9e5f3922b642487f5ab1f","ref":"refs/heads/main","pushedAt":"2023-12-26T10:25:38.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"ENH Add coprediction call","shortMessageHtmlLink":"ENH Add coprediction call"}},{"before":"4ef9407bcc39c835439bde097ac13baec06fe24f","after":"afbd865555c21d8d4db32a933676801b9d39e6d2","ref":"refs/heads/main","pushedAt":"2023-12-18T07:44:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"TST Update test outputs","shortMessageHtmlLink":"TST Update test outputs"}},{"before":"07ba9de2b94eea4d680bde5a54db6d9fd329b2fa","after":"4ef9407bcc39c835439bde097ac13baec06fe24f","ref":"refs/heads/main","pushedAt":"2023-12-18T05:56:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"ENH Simplify output from amps\n\n- Return `num_genes` as an integer\n- This makes the output size about ⅛ and with caching of the SQL calls,\n this should be much faster too as reduces the number of needed SQL\n calls","shortMessageHtmlLink":"ENH Simplify output from amps"}},{"before":"efea0546b6f9bc074b0e91c8f18dd7b8ebbcca96","after":"07ba9de2b94eea4d680bde5a54db6d9fd329b2fa","ref":"refs/heads/main","pushedAt":"2023-12-18T05:26:12.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"DOC Use compressed versions of the files","shortMessageHtmlLink":"DOC Use compressed versions of the files"}},{"before":"dcce6a930e2d72625bf65768398d679a3153cb50","after":"efea0546b6f9bc074b0e91c8f18dd7b8ebbcca96","ref":"refs/heads/main","pushedAt":"2023-12-14T06:39:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"MIN Sort by AMP Accession","shortMessageHtmlLink":"MIN Sort by AMP Accession"}},{"before":"f7bd7dd5c817b5bce58fad8a47719334fe8ea99e","after":"dcce6a930e2d72625bf65768398d679a3153cb50","ref":"refs/heads/main","pushedAt":"2023-12-14T06:27:11.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"MIN Remove datatable dependency\n\nIt is faster, but not available on all versions of Python","shortMessageHtmlLink":"MIN Remove datatable dependency"}},{"before":"be5f11778bb3d2cd5f907c5167b42121717c8cdc","after":"f7bd7dd5c817b5bce58fad8a47719334fe8ea99e","ref":"refs/heads/main","pushedAt":"2023-12-12T06:26:34.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"MIN Test microbial_source filter","shortMessageHtmlLink":"MIN Test microbial_source filter"}},{"before":"c83d417abd176a2ef6cd169b7c4d5ab9b1ab8b40","after":"be5f11778bb3d2cd5f907c5167b42121717c8cdc","ref":"refs/heads/main","pushedAt":"2023-12-01T04:55:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"ENH Remove superfluous genera\n\nThis avoids having effectively multiple entries for the same thing\n\n- Genus\n- Genus species","shortMessageHtmlLink":"ENH Remove superfluous genera"}},{"before":"989bbd661f563dd26fcd60061ee5193625ab7b6d","after":"c83d417abd176a2ef6cd169b7c4d5ab9b1ab8b40","ref":"refs/heads/main","pushedAt":"2023-12-01T04:28:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"ENH Only return actually used taxa","shortMessageHtmlLink":"ENH Only return actually used taxa"}},{"before":"590ab7e647ec085e5b814621a555281bf988bbc4","after":"989bbd661f563dd26fcd60061ee5193625ab7b6d","ref":"refs/heads/main","pushedAt":"2023-12-01T02:46:48.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"BUG Fix filtering by habitat/taxonomy","shortMessageHtmlLink":"BUG Fix filtering by habitat/taxonomy"}},{"before":"a70e854d7d6e6484d49aed6d1c167f886c518d79","after":"590ab7e647ec085e5b814621a555281bf988bbc4","ref":"refs/heads/main","pushedAt":"2023-11-29T06:28:35.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"RFCT remove print() statements","shortMessageHtmlLink":"RFCT remove print() statements"}},{"before":"66c2c9a03cb434cd286705f04b55dceed59c3401","after":"a70e854d7d6e6484d49aed6d1c167f886c518d79","ref":"refs/heads/main","pushedAt":"2023-11-27T06:45:51.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"BUG Fix automated conversion from dump-pydantic","shortMessageHtmlLink":"BUG Fix automated conversion from dump-pydantic"}},{"before":"9ca48e7334a475a83e466180d24bc640615d7ebc","after":"66c2c9a03cb434cd286705f04b55dceed59c3401","ref":"refs/heads/main","pushedAt":"2023-11-24T07:53:06.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"RFCT Remove unused function","shortMessageHtmlLink":"RFCT Remove unused function"}},{"before":"b26461fde38dd680bb5cd18c8d5454e48a6f8fee","after":"9ca48e7334a475a83e466180d24bc640615d7ebc","ref":"refs/heads/main","pushedAt":"2023-11-04T07:44:05.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"RFCT Move common code to mk_result","shortMessageHtmlLink":"RFCT Move common code to mk_result"}},{"before":"3049ac10b6e3de5e1f98aa4d7015c6eaca5873e8","after":"b26461fde38dd680bb5cd18c8d5454e48a6f8fee","ref":"refs/heads/main","pushedAt":"2023-11-04T07:08:31.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"RFCT Convert to Unix format (no CRLF)","shortMessageHtmlLink":"RFCT Convert to Unix format (no CRLF)"}},{"before":"a4d23bba0e1d2b6027a5599d8da0074450976815","after":null,"ref":"refs/heads/dev","pushedAt":"2023-11-02T08:53:28.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNi0yOFQwNzo0Mzo1My4wMDAwMDBazwAAAARxmcu1","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNi0yOFQwNzo0Mzo1My4wMDAwMDBazwAAAARxmcu1","endCursor":"Y3Vyc29yOnYyOpK7MjAyMy0xMS0wMlQwODo1MzoyOC4wMDAwMDBazwAAAAOlqE1O"}},"title":"Activity · BigDataBiology/AMPSphereBackend"}